rs33840430 SNP Detail

Summary

• ID
  rs33840430
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:15302968 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGAGTTCT CGGGGGTAAG
  GATAAAATTA TATGAAAAGG TACAGTCTTT ATAAAAAGTA CCCTTAATGA GACATTTAAA
  AACTGAGACA TTAAAAAAAA AAGTACTAAT TCAAAGAACT TCACTAGCCT ATGCTGTTGG
  TTTGGGTACT TAGAAAAAGT TGATATGTAA CAATAGATAT AACATAGTGT GATATAAACA
  M
  AACATTTAAA GTCATTCTTT TTGAGACCTC ACAATTTACT AAACACAATT ATAAATTCAC
  CGTGTGGATA ATTTCTGGTT TAGCCTTGTG ACGTGCATTT TACTATCACA TCTCTCCTAC
  AGTAGGTATG ACAGAAGAAC TTGACTCAAC TATAGCTCCC ACTTGTCCAA CCAAACAAGA
  ATGTGGGTAT TGTCAAAGTT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	CAST/EiJ	FVB/NJ	PWD/PhJ
ss47358107	NES11370329	PERLEGEN	MM_PANEL2	f	SNP	C	C	A	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	CAST/EiJ	FVB/NJ	PWD/PhJ
rs33840430					SNP	C	C	A	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47358107	NES11370329	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:15302968 () rs orientation: forward

Symbol	Name	Function Class
Gm61108	predicted gene, 61108	within coordinates
Rr638	regulatory region 638	1931 bp proximal
Rr766	regulatory region 766	651 bp proximal
Rr2063	regulatory region 2063	within coordinates
Rr475207	regulatory region 475207	1910 bp proximal