rs33840896 SNP Detail

Summary

• ID
  rs33840896
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:15346951 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAGTCTAAT AATGTCAATA
  TTACTGCTTA ATAACAAACA ACTAATTTGG CCTATGTAGT AAAAGATAAA GTCTGAGGAT
  GACAGAAAAA TAGGATGGGA GAACTCTAAC ATTCTTCACT GCCTCTGTAC TCTATGCGTT
  TAGTTTTTCA GGTTACAATA GTGAGGTGGC AGAACAAGAG TCACCTCATT TACTCTCCTC
  K
  ACAGAATCTC ATAGTGACAA TCTATAGAAA CTCATAGTGA TGATCTGCAG ACAAAGATGC
  TAACCTGACA CCGAAAATTC AAAACTGAGG CAGAAATATC CCACGAACCA CAGAAATAAG
  AGCCATGATT GAGTGATAAG AGCTGCCTGC TCTGACGTGT CACCCATCTC CTTGTCGGCA
  CACTTCCAGA CAGACTTCAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
ss47358500	NES11369228	PERLEGEN	MM_PANEL2	f	SNP	T	T	G	T	T	T	T	T	T	G	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
rs33840896					SNP	T	T	G	T	T	T	T	T	T	G	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47358500	NES11369228	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:15346951 () rs orientation: forward

Symbol	Name	Function Class
Rr2066	regulatory region 2066	within coordinates
Rr2236	regulatory region 2236	603 bp proximal