rs33840964 SNP Detail

Summary

• ID
  rs33840964
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:143204347 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCCCATCCAT CTCCCTTCCA AATGCCACTT CCTCTTTAAA
  ATGAGGGAGG ACTCAGAGTC CTGGATTTCA ATGGCTGCCC CAAAGAAGAG GAGCGTGACT
  Y
  CAGGCACCTG GTACTCTTTA AATCATCTCT TGCCTCTCTC CCTAGGGCCA GGGAGTGGAG
  CCTGTGCCCA TCTGCCCTCA CCTAGGCTGG GGAGTGGGGG                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47358606	NES11521013	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs33840964					SNP	T	T	T	T	T	T	C	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47358606	NES11521013	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:143204347 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19986	CpG island 19986	899 bp distal
E230032D23Rik	RIKEN cDNA E230032D23 gene	within coordinates
Rr167026	regulatory region 167026	746 bp distal
Tnfrsf22	tumor necrosis factor receptor superfamily, member 22	949 bp upstream
Tssr75968	transcription start site region 75968	1005 bp upstream
Tssr75969	transcription start site region 75969	939 bp upstream