rs33841046 SNP Detail

Summary

• ID
  rs33841046
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:191228282 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCACTCTAC TGATTGAGCT
  ACATCTCTAG CCCCTGGAAG AGCATCAAAC AAGCCAAGCG CTGCACTAAT GCAGAAAAGA
  ATTAACCAGC CGCGTCCAGC CCAGCCCAGA CGACTTTGTC ACCTCCTCAC ACCATCTATA
  CAGCACAGCC AAAGTGGATT TACCATCATT GGCAACTTGA CGACACGCTA CAATGCAGCT
  Y
  ACAATTGTCA GTAACTCCTG CTCCAGGGGT CTTACACCCT CACACAGACA TACCTTCAAC
  ACAAATGTAC GTAAAATAAA AATAAGTAAA TTACATAATC ACCGTAGAAA CAGACCTCCA
  TGTGCTCCCA TGAGGGTGTT TCTAGGAATC TTTAACTGAA GAGAGAGGAC ATATCCCAAA
  TGTAGGCAAC ACCACACCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49546094	NES12904558	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33841046					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49546094	NES12904558	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:191228282 () rs orientation: forward

Symbol	Name	Function Class
Gm37432	predicted gene, 37432	775 bp upstream
Rr426168	regulatory region 426168	1606 bp distal
Rr426169	regulatory region 426169	1505 bp distal
Rr426170	regulatory region 426170	926 bp distal
Rr426171	regulatory region 426171	614 bp distal