rs33841670 SNP Detail

Summary

• ID
  rs33841670
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:191196620 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTTCTCTCG GTACCCACCA
  GGCCACTCAG GGAAGAGGTA CGGTAAGCAT GCCAATGGAA TGCTTTCATC TATAAATTAC
  CTTGGTCATG GTGTTTCATC ACAGCAAAAG AACAGTAGCT AAGACAGTGA AGGAGGGACA
  TCTCTTTTGT AGCTGCAGCC TGTAAGTTAA ACCAGAAAGA CAGATTAAGA GCAGAGAGCA
  K
  AGTTTAACTC CATGCAGAAC ACATATATGC ACGGATTAGC TCAAAAAGAG TGGTTAGACC
  CTGAGGCCTT TTAACTGCAG TAGGTAAAGA AGAGGGGAAG AAAGGCATTT ATAGAAAGCT
  AACTGCTTAG AAAGACAAAT GGATTGTTTA GGAGAAACAA ACAAGTCTGT GCCATTTCTC
  CCCATAATTC TATGTGGCCT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49546300	NES12906322	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33841670					SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49546300	NES12906322	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:191196620 () rs orientation: forward

Symbol	Name	Function Class
Gm32200	predicted gene, 32200	within coordinates
Rr29197	regulatory region 29197	1819 bp distal
Tssr15794	transcription start site region 15794	900 bp downstream