rs33841920 SNP Detail

Summary

• ID
  rs33841920
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:191225645 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGATGCCTCC AGTTTAAGAT
  TCTAAATGAC ATTTACTTGA GGATGGAGAA TAAACAGTTC TGAAATGCCC AGCTTATTGG
  AACAACCCAA CTCAGGAGAG TTCTGAGTGA GGAGACTTAG GAGTGTGCAC ACGATCCAAC
  ATAAGCTTCA GCGTTTCCAA CGAGAAGTCT GATTTCCTGG ATTCTCCATG ATGGAAACAT
  Y
  CAGAAATATT TCTAGGATTT GCATGTGGCC ACAGGACCTC ATAAGTATTC CTCACAACCC
  GACTAGCTGT GATCTTGAAT CTGCTTTTCC TGAGTCAGCA CACTTTACCA TAACCAGCCA
  GCCCAGACCT CAGTGCTCAT GGAGATAAAG ACCACAGAGC CACAGAGTCA AGGGCTTAAA
  GATAGCAGAA AGGTCACCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49546108	NES12904585	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33841920					SNP	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49546108	NES12904585	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:191225645 () rs orientation: forward

Symbol	Name	Function Class
D1Mit209	DNA segment, Chr 1, Massachusetts Institute of Technology 209	248 bp distal
Gm37432	predicted gene, 37432	within coordinates
Rr426168	regulatory region 426168	5 bp proximal
Rr426169	regulatory region 426169	1032 bp proximal
Rr426170	regulatory region 426170	1491 bp proximal
Rr426171	regulatory region 426171	1712 bp proximal