rs33842264 SNP Detail

Summary

• ID
  rs33842264
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:42976887 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCCTCCCA GTGAAGTGCC
  CAGCCCAGCC CACAGTGACT TGACCTCAGC CTCCTGGAGA GAGCTTACTA GGTCAGAAGA
  GGAGTTTCCA GAACCATGTG ACTTGCATAG AATAGTCAAA GAAATAAAGG CTGTGGAAAA
  TAGCTCCAAT TAAGGAGGGT AGGCTGCAGA AATAATTCAC ACACCTGAAG GAAAACCTCG
  Y
  CTCTCCGAAC GGCTCTCCAA ACAATGATAA AATATTTAGC TTGGATTTTT CTTTTTTGAG
  GGAGAGGGTC TCAGGCTGGC CTTGACTTCA CTACATTGCA CAGACTTGGC CTCAAACCTG
  CAATCTGCTT CCATAGTTAC TACAATTATG GACGTGTCAT CCTGTGTGTC TTTTTTTTTT
  TTTTTAATGA GCCCATTAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47859085	NES11960679	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33842264					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47859085	NES11960679	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:42976887 () rs orientation: forward

Symbol	Name	Function Class
Rr219473	regulatory region 219473	1087 bp distal
Rr219474	regulatory region 219474	within coordinates
Rr227635	regulatory region 227635	1715 bp proximal
Sobp	sine oculis binding protein	within coordinates