rs33842268 SNP Detail

Summary

• ID
  rs33842268
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:42977159 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGCTGGCC TTGACTTCAC
  TACATTGCAC AGACTTGGCC TCAAACCTGC AATCTGCTTC CATAGTTACT ACAATTATGG
  ACGTGTCATC CTGTGTGTCT TTTTTTTTTT TTTTAATGAG CCCATTAAGT GTTTGTTCCT
  TGCTTCCCTT GCTATAGTGT CCTCCAGCAC ACATTTAGCT GAAACATTTC AAGGCAGGAG
  R
  ACACATTCCT CCAAACTTCC TTTTACCAAT GTGGTACTCT CAAAACATCT CAAAGACCCA
  TTACCCTGAT AGGTTCTACG TGTGGATTAG ATTCCACACA GGTTTACTGA CATTTCGCCT
  TGTTAGGTCA GATAGGCACG GAGACAGACC TTTCCAGAAA AGGGCCTCTG AAGTGTTCAG
  GAAGCTGCAA GTGTGTTATT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss47859089	NES11960637	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs33842268					SNP	G	G	G	G	G	A	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47859089	NES11960637	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:42977159 () rs orientation: forward

Symbol	Name	Function Class
Rr219473	regulatory region 219473	1359 bp distal
Rr219474	regulatory region 219474	within coordinates
Rr227635	regulatory region 227635	1443 bp proximal
Sobp	sine oculis binding protein	within coordinates