rs33842323 SNP Detail

Summary

• ID
  rs33842323
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:191014568 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAAGGGTGAT CATAGAACCG GTTCAGTGGG TGAGATGTTT
  ATCTGTAAAC ACTACAAAGA ACAGGGCCCA GAAGGCTTTT CGGGGGAGCC ACAATCAGTT
  Y
  CTCAGTCTCT GCTGTGTGTT GTGTGTATTT GTGTGTGTTG TATATGTGTC ACATGCATAT
  ACACATAGAC ATGCTACATG GATACATTAT CAGATTTTAG                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49547271	NES12913039	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33842323					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49547271	NES12913039	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:191014568 () rs orientation: forward

Symbol	Name	Function Class
Gm37168	predicted gene, 37168	within coordinates
Rr426097	regulatory region 426097	748 bp distal
Rr426098	regulatory region 426098	140 bp proximal
Rr426099	regulatory region 426099	665 bp proximal
Tssr373	transcription start site region 373	1542 bp upstream
Tssr10760	transcription start site region 10760	954 bp downstream
Tssr10761	transcription start site region 10761	934 bp downstream
Tssr10762	transcription start site region 10762	907 bp downstream
Tssr10763	transcription start site region 10763	892 bp downstream
Tssr10764	transcription start site region 10764	869 bp downstream