rs33842426 SNP Detail

Summary

• ID
  rs33842426
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:191030434 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGACTCAGTG ACCTAAAGAC
  TCCAAAAAGT TCCACAACTC TCCAGTGGTT CCCAAGGCTG TGATCCAAGC ATCCAATACA
  CGGGCTCTGA GCCTATGAGC AGTCACTTTT CAAAAGGCCG GTCCCACCTA CTACCAGCTG
  GGCTCTCCAG GCCACACCAG AGACTCCTAA GGACTGCCCT CGGCATCAGG ACCCTCTGCT
  Y
  TCTCAGGGAG GGCTCAAGCG GAGGTTTGCT GGAATAGAGG AGGAATATGC TGTGCCTGTT
  GTCCCTGTAT CTCTCCAGAT GTAGCACAGG CCACTGTGTC CAAGGCTGAG TCAACCCACT
  ACTCAGAAAT CAACTCCTAT GAGAAAACCA GATTCCAAAT CCTGAACCAG GACCTGGGGC
  AGGAGGATTT CCAAGATCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49547173	NES12912696	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33842426					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49547173	NES12912696	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:191030434 () rs orientation: forward

Symbol	Name	Function Class
Gm70230	predicted gene, 70230	1203 bp upstream
Rr426104	regulatory region 426104	1035 bp distal
Rr426105	regulatory region 426105	938 bp proximal
Rr426106	regulatory region 426106	1215 bp proximal
Rr426107	regulatory region 426107	1489 bp proximal
Tssr10766	transcription start site region 10766	1312 bp upstream