rs33842554 SNP Detail

Summary

• ID
  rs33842554
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:42977481 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTAGGTCAG ATAGGCACGG
  AGACAGACCT TTCCAGAAAA GGGCCTCTGA AGTGTTCAGG AAGCTGCAAG TGTGTTATTG
  ATAGTGGCCT TGCGGCTGCT TCCCAACCGA AAGCGCACTC TGGAGTCTCT CAGAAATCAG
  TCGTGATGCA CGTATCACTC AATGGTGGAA TGATTACCTA CTGTGCATAA GCCATGAGTC
  Y
  AATCCCAAAT GTGAAGGAAG AATGGAAGGA AGGAAGAGAA GTATAGAGGG GAGGAGGAAG
  AAAGGGAGGG AGCAGGGAGA GAGGGCAGGG AAAAAGGAAG GGAAGAGAAA ATGAGCTGGC
  TGGGTCTGGT GGCACAGGGC TGTGATCCTA AGTACACAAG AGGCAGATAC AAGAGATTTA
  GGGTGTGCTA GCTGAAAACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47859095	NES11960640	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33842554					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47859095	NES11960640	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:42977481 () rs orientation: forward

Symbol	Name	Function Class
Rr219473	regulatory region 219473	1681 bp distal
Rr219474	regulatory region 219474	within coordinates
Rr227635	regulatory region 227635	1121 bp proximal
Sobp	sine oculis binding protein	within coordinates