rs33842579 SNP Detail

Summary

• ID
  rs33842579
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:191014285 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCACTTCAC AGACATGGAA
  GAGAATAGAA CAAAAGATTC CACAGATCAA CTCAGGGTGG TGTCAACAAG AGACAGCAAT
  GAGGCGGAAC ACCCGGGTCG CCGCTAACTC TAGCTCTCAG GCTGTGCTGG CCACTGGCTT
  TCCCTACCAG AGGACGGTTT TGACGGGCAG ACACAGTCAC TGCACTAGTG GGTGCTCACC
  R
  TGACAGATCA AGACAACTGT GTGGTATGCA CTCCGGGTTT CAGTCTTCCC GGACATCTAA
  CCAACCTGGG TTTTCTGGGC CATGGGGACC CAGGCCATTT TCTATGCTGA CCCCTGCCTG
  CGCTTTTGTC CCCTACAGAG CTGGTCTGAA GCACAGTCCT CTTCCCCGTG CATGAAGACC
  AAGAAGGGTG ATCATAGAAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49547277	NES12913033	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33842579					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49547277	NES12913033	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:191014285 () rs orientation: forward

Symbol	Name	Function Class
Gm37168	predicted gene, 37168	within coordinates
Rr426097	regulatory region 426097	465 bp distal
Rr426098	regulatory region 426098	423 bp proximal
Rr426099	regulatory region 426099	948 bp proximal
Tssr373	transcription start site region 373	1259 bp upstream
Tssr10760	transcription start site region 10760	671 bp downstream
Tssr10761	transcription start site region 10761	651 bp downstream
Tssr10762	transcription start site region 10762	624 bp downstream
Tssr10763	transcription start site region 10763	609 bp downstream
Tssr10764	transcription start site region 10764	586 bp downstream