rs33842581 SNP Detail

Summary

• ID
  rs33842581
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:191014047 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGGG GTGGCGGGAC ATTCAGACCA
  Y
  GGCCATCTCC TTCTGTCGCT GCATG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49547279	NES12913031	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	C	C	C	T	C	T	C	T	T	T	T
ss146503676	ENSMUSSNP5896597	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C						T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33842581					SNP	T	C	C	C	C	C	C	C	T	C	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49547279	NES12913031	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:191014047 () rs orientation: forward

Symbol	Name	Function Class
Gm37168	predicted gene, 37168	within coordinates
Rr426097	regulatory region 426097	227 bp distal
Rr426098	regulatory region 426098	661 bp proximal
Rr426099	regulatory region 426099	1186 bp proximal
Tssr373	transcription start site region 373	1021 bp upstream
Tssr10760	transcription start site region 10760	433 bp downstream
Tssr10761	transcription start site region 10761	413 bp downstream
Tssr10762	transcription start site region 10762	386 bp downstream
Tssr10763	transcription start site region 10763	371 bp downstream
Tssr10764	transcription start site region 10764	348 bp downstream