rs33842583 SNP Detail

Summary

• ID
  rs33842583
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:191013929 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCATGGCTAG CAGAGTGGGG
  AAGGACATTA CTGACAGACC AACACTCTGC TTCCAGGGCG TAGGAGCTGG TGGGCAGGTA
  CAGACCCTGT CCTTGTAGCA CAAGGTCACA GTTGGTTTCC AGGACCTCCT TCACTCTGCC
  TACCTAACCT TGGCCATACC ATTTTGCCTC AGCAGAAGAA ACAGAATTAC CTCGTCACTT
  Y
  CTGGTATCTG GTCTGCCCCC AGAAGACCAG GAGCCACCTC CAGATACCAC TGATACATGG
  ACTTGGGATT AAGTTTTCCA ACACATTTTC CTCTGGGGTG GCGGGACATT CAGACCATGG
  CCATCTCCTT CTGTCGCTGC ATGGAATGAA GAGCCTTCAC TTCACAGACA TGGAAGAGAA
  TAGAACAAAA GATTCCACAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49547283	NES12913024	PERLEGEN	MM_PANEL2	f	SNP	C	T	T	T	T	T	C	C	T	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33842583					SNP	C	T	T	T	T	T	C	C	T	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49547283	NES12913024	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:191013929 () rs orientation: forward

Symbol	Name	Function Class
Gm37168	predicted gene, 37168	within coordinates
Rr426097	regulatory region 426097	109 bp distal
Rr426098	regulatory region 426098	779 bp proximal
Rr426099	regulatory region 426099	1304 bp proximal
Tssr373	transcription start site region 373	903 bp upstream
Tssr10760	transcription start site region 10760	315 bp downstream
Tssr10761	transcription start site region 10761	295 bp downstream
Tssr10762	transcription start site region 10762	268 bp downstream
Tssr10763	transcription start site region 10763	253 bp downstream
Tssr10764	transcription start site region 10764	230 bp downstream