rs33842999 SNP Detail

Summary

• ID
  rs33842999
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:191011947 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AACACCCCAC AGTGTATTGT GTATTGGGCT GCTACATTGT
  ATAATAAATG TGCACCATTG TTACTTACCA ATTAATAGTG ATAAAAGATG TCCAAGCTAT
  Y
  GCCTTCCCAG AGCTCTTAGA ATGCATGGTG AGATGTTTAC TGTTACAGTT TATATGTATG
  TATCTTGGTC AGGGTTTCTA TTCCTGCACA AACATCATGA                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49547304	NES12913066	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33842999					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49547304	NES12913066	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:191011947 () rs orientation: forward

Symbol	Name	Function Class
Gm37168	predicted gene, 37168	within coordinates
Gm70861	predicted gene, 70861	1880 bp upstream
Rr396719	regulatory region 396719	1795 bp downstream
Rr426095	regulatory region 426095	1929 bp distal
Rr426096	regulatory region 426096	1404 bp distal
Rr426097	regulatory region 426097	974 bp proximal
Tssr373	transcription start site region 373	1077 bp downstream
Tssr10760	transcription start site region 10760	1664 bp upstream
Tssr10761	transcription start site region 10761	1673 bp upstream
Tssr10762	transcription start site region 10762	1703 bp upstream
Tssr10763	transcription start site region 10763	1717 bp upstream
Tssr10764	transcription start site region 10764	1747 bp upstream