rs33844005 SNP Detail

Summary

• ID
  rs33844005
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:51741171 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACTGTTAA CATTGTGCTT
  CCTGCCCACT GCTCCTGAGA ACACTGGAAT GAGTCTCTAG AACTTTTAGA TAACAAATTC
  TCCCAGTTAC ACTCTAACAG TTCAGCTTGC CTAACTGGAA TTCTCTCTCT GACCCCTTGC
  TGAGTCATTT CCTCTCTTCA GTCCCCTTTG AAACTTCCTA TTTATCCTGT CCTCTCACCT
  S
  TCACTCCTCC CTGCTCCTGC CTAGATTCTC CTTCTTTCAG AATGATTTGG GGTAGGTGGA
  GGGTAAAATG GTGTGCTGCC CTTGAGTGTG AGATTCTCCT GTTTCTGCCA CCCAAGTGCT
  GGGATTGCAA ATGGACTTCA GCTTGCTCAG TTCATGATGA TCTTCATGAA AGTCTATGTA
  TGGCTGCTCG GTACTTTCTG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	MSM/Ms
ss38930528	mCV24841390	ABI	CRAMUS_MOUSE	f	SNP	C	G	G	G
ss137724500	ENSMUSSNP5191845	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	G		G	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	MSM/Ms
rs33844005					SNP	C	G	G	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:51741171 () rs orientation: forward

Symbol	Name	Function Class
Ap4s1	adaptor-related protein complex AP-4, sigma 1	within coordinates
Cpgi4590	CpG island 4590	1833 bp distal
Gm61171	predicted gene, 61171	1799 bp downstream
Rr256575	regulatory region 256575	1030 bp proximal
Rr265419	regulatory region 265419	1170 bp distal
Tssr113422	transcription start site region 113422	1742 bp downstream