rs33844984 SNP Detail

Summary

• ID
  rs33844984
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:52653998 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGAAGGATT TCCTCAGATT
  TTTTTAAATA AGGAAAAACT TATTTTTGTA TTCTGGAACA TTTGGACTTT ATTGTTAGTA
  AATATTATTG TCATAATAAT CCTACTTGTT CACATTAGCA GTAATTCTGT TGTTTTATCC
  AAAAATAGCT ACTTAAAACT ACTTACTGGG TAATTTTCTC AAACTGTCAT ACATCTTAGA
  R
  TCAACGACTT TTTAGATATA ATGAGATGTA TTTTTTCAGA GAAAGGAAAC TGAGACTAAG
  CTCCCTTGAA TAGTATTGGC ACAGAACCTG TCAGTGTTTG AGGCCAGCTC CATTTCTCTT
  TCCTTCACAC CACTGAGTAC CGTTAAGTCA ATACTTTTTT CAATGGGTTA TGAAGGAAAA
  AGACTTTAAG TCTATCATTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38900600	mCV22548536	ABI	CRAMUS_MOUSE	f	SNP		A	G					G		G
ss52423937	NES15399037	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	G	G	G		A	G	G	G	G	G	G	A	G
ss137738397	ENSMUSSNP1497926	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G							G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33844984					SNP	A	A	G	G	G	G	G	G	A	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52423937	NES15399037	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:52653998 () rs orientation: forward

Symbol	Name	Function Class
Gm35239	predicted gene, 35239	within coordinates
Gm59577	predicted gene, 59577	1406 bp upstream
Rr466028	regulatory region 466028	1555 bp distal
Tssr113445	transcription start site region 113445	423 bp upstream