rs33845373 SNP Detail

Summary

• ID
  rs33845373
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:111504164 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTGGC TCCCCGAGCT CAGGGAGAGG
  M
  ACCATATGGG ATGACAGGCA CGGGC                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39038740	mCV24937691	ABI	CRAMUS_MOUSE	f	SNP	C	A	C	A
ss138696530	ENSMUSSNP4445768	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A		A
ss324159942	CHEV_12_112775941	CHEVERUD	SCREENING_POP	f	SNP					C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33845373					SNP	C	A	C	A	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:111504164 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5150	CpG island 5150	within coordinates
Eif5	eukaryotic translation initiation factor 5	371 bp upstream
Gm56546	predicted gene, 56546	within coordinates
Gm58608	predicted gene, 58608	286 bp upstream
Gm60631	predicted gene, 60631	789 bp downstream
Rr403512	regulatory region 403512	97 bp upstream
Rr473212	regulatory region 473212	1685 bp distal
Rr473213	regulatory region 473213	within coordinates
Rr473214	regulatory region 473214	1001 bp proximal
Rr473215	regulatory region 473215	1063 bp proximal
Tssr115317	transcription start site region 115317	1684 bp downstream
Tssr115318	transcription start site region 115318	1619 bp downstream
Tssr115319	transcription start site region 115319	525 bp downstream
Tssr115320	transcription start site region 115320	419 bp upstream
Tssr115321	transcription start site region 115321	534 bp upstream
Tssr115322	transcription start site region 115322	601 bp upstream
Tssr115323	transcription start site region 115323	739 bp upstream
Tssr115324	transcription start site region 115324	1055 bp upstream
Tssr115325	transcription start site region 115325	1089 bp upstream
Tssr115326	transcription start site region 115326	1704 bp upstream
Tssr117828	transcription start site region 117828	187 bp downstream
Tssr117829	transcription start site region 117829	849 bp downstream