rs33845823 SNP Detail

Summary

• ID
  rs33845823
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:3843465 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAGGGGAGA AGCCATAGAG
  CACATAGTCC CTGCTTAGGG GCAACCTTAA TTATGTCAAC CACAGCTCCA AGATTCCCAC
  AGGGTAGGAG CTCAGTAGAT GGTGGTAAAC CATTCCCTAA GGCTACTGGG AATAGTTCTA
  GGGTCCACAG CAGCCTCTCC CCTTGAGTAC CCAAGTTAGA CCTGGAAGAA CCAGCAGAAA
  M
  CCCAGGATCC ACGACATCTG ACTCCCTACT CCATCACTTC TTGGGCTAGA GGCTCAAATT
  CTCTGGATTC TGAACCCCAG AGGCCTGTGC TGGGGGCTCC ACTGGGAAGT ATAGAAAGCT
  CCTTATTCCT GGCCTGGTGT TACCTAACAC CCAGCCTTGG TTGCCTTGCA GTTCCTGTGT
  CACCTCTCAC CTGCCTGTTC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss38993628	mCV25180838	ABI	CRAMUS_MOUSE	f	SNP	C	A	A
ss137098011	ENSMUSSNP5908791	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A	A
ss323872818	CHEV_12_3793465	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs33845823					SNP	C	A	A	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:3843465 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4361	CpG island 4361	1270 bp distal
Gm60243	predicted gene, 60243	within coordinates
Rr403217	regulatory region 403217	1345 bp downstream