rs33845891 SNP Detail

Summary

• ID
  rs33845891
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:53861091 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTTCATTGA ACGTAAAGGC
  AGTCAGAAGC CTGGGGGGTG GAAGGGGCTG GAGCACTCCT CACCTCTCCC CAGCCTCCTG
  GAGGTGAATA ATCCAACACA CTTAACTGTT CCTTTAAAAC TTTTATTTTT TAAATCACCT
  AAATCATTCT TCCAGTCCTC TTCTGGAGCT TTCTAAATTC TTCTTTCGGT CCCCAGAACT
  R
  AATGTATTTA AAGTTCTCAA AACCACGCAG AAGAAAACAG GAAAAATAAC TTGAGTCTAA
  AAATCCAGTG CTGATAGCTC CCACTTAGAG TCAGCCGCCC CACGTGTACA GGGAACAGTG
  TAGTGTACAC ACATACAAGC CAGCACACAG GCATGTTGGC ATGTGCATTC CTAGCATTGC
  AGAGGCACCA GCCTTCTTCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J
ss38900660	mCV22363428	ABI	CRAMUS_MOUSE	f	SNP	G	A	A
ss137760095	ENSMUSSNP5158516	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J
rs33845891					SNP	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:53861091 () rs orientation: forward

Symbol	Name	Function Class
Npas3	neuronal PAS domain protein 3	within coordinates
Rr260842	regulatory region 260842	891 bp distal
Rr267638	regulatory region 267638	1492 bp distal