rs33846137 SNP Detail

Summary

• ID
  rs33846137
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:111505435 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGATG GCAGCCGGGG GAGGCGCCAT
  Y
  GGCGAAGTTG GTGGCCCCCG GGCCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss39023567	mCV24937680	ABI	CRAMUS_MOUSE	f	SNP	T	C	T
ss138696536	ENSMUSSNP3946152	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs33846137					SNP	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:111505435 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5150	CpG island 5150	within coordinates
Eif5	eukaryotic translation initiation factor 5	within coordinates
Gm56546	predicted gene, 56546	766 bp upstream
Gm58608	predicted gene, 58608	within coordinates
Gm60631	predicted gene, 60631	367 bp upstream
Rr403512	regulatory region 403512	873 bp downstream
Rr473213	regulatory region 473213	209 bp distal
Rr473214	regulatory region 473214	249 bp distal
Rr473215	regulatory region 473215	within coordinates
Snora28	small nucleolar RNA, H/ACA box 28	1945 bp upstream
Tssr115319	transcription start site region 115319	1796 bp downstream
Tssr115320	transcription start site region 115320	758 bp downstream
Tssr115321	transcription start site region 115321	723 bp downstream
Tssr115322	transcription start site region 115322	626 bp downstream
Tssr115323	transcription start site region 115323	519 bp downstream
Tssr115324	transcription start site region 115324	197 bp downstream
Tssr115325	transcription start site region 115325	127 bp downstream
Tssr115326	transcription start site region 115326	433 bp upstream
Tssr115327	transcription start site region 115327	1212 bp upstream
Tssr117828	transcription start site region 117828	1045 bp upstream
Tssr117829	transcription start site region 117829	395 bp upstream