rs33846402 SNP Detail

Summary

• ID
  rs33846402
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:69276020 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAAGC AATTATCTCT GGGGCGTATA
  K
  TTAAGATCTT TCTGAAAAGG AAAAC                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	SM/J	WSB/EiJ
ss38900688	mCV22784586	ABI	CRAMUS_MOUSE	f	SNP		G	T
ss51013755	NES14402693	PERLEGEN	MM_PANEL2	f	SNP				G	T	G			G
ss137856417	ENSMUSSNP5612626	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G			T
ss324083400	CHEV_12_70330233	CHEVERUD	SCREENING_POP	f	SNP							G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	SM/J	WSB/EiJ
rs33846402					SNP	G	G	T	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51013755	NES14402693	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:69276020 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4690	CpG island 4690	960 bp distal
Gm47545	predicted gene, 47545	within coordinates
Pole2	polymerase (DNA directed), epsilon 2 (p59 subunit)	1051 bp upstream
Rr403319	regulatory region 403319	932 bp downstream
Rr467012	regulatory region 467012	1310 bp distal
Rr467013	regulatory region 467013	603 bp distal
Rr467014	regulatory region 467014	1034 bp distal
Rr467015	regulatory region 467015	75 bp proximal
Rr467016	regulatory region 467016	167 bp proximal
Tssr113624	transcription start site region 113624	605 bp downstream
Tssr116494	transcription start site region 116494	1062 bp upstream