rs33846725 SNP Detail

Summary

• ID
  rs33846725
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:74850809 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACAGT GTTTGTGTAT CATTCTCCAC
  R
  TTTTTCAGTT TTCTCTCCAT ATTCC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss38878080	mCV23602232	ABI	CRAMUS_MOUSE	f	SNP	G	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs33846725					SNP	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:74850809 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4766	CpG island 4766	within coordinates
Rr467930	regulatory region 467930	within coordinates
Tssr113890	transcription start site region 113890	160 bp downstream
Tssr113891	transcription start site region 113891	102 bp upstream
Tssr113892	transcription start site region 113892	185 bp upstream
Tssr113893	transcription start site region 113893	235 bp upstream
Tssr113894	transcription start site region 113894	288 bp upstream
Tssr113895	transcription start site region 113895	346 bp upstream
Tssr116673	transcription start site region 116673	64 bp upstream