rs33848407 SNP Detail

Summary

• ID
  rs33848407
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:149280181 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAGGCTGCA GGTGTCAACC
  TCTTACTCTA GCAGCTTCTT ACTGAAAGAG CAAGAAAGAG CAAGAAAGTT TTTAGGACAT
  TTTAGAAGTT ATCAGTAGCA TTTCGGTTCA GTTCGAGAGT GAGAGCGTCT GGAGACCCTC
  AGACTTTAAA GCCACACCAG AGTCCTCCTC TGTGCCCCTT CTCTACCCTC TCCAGGCTGG
  R
  AGGCTCCCGG CAAGCCACCA CCATCACCTT CTCTGATGAT GAGACACAAT TAGACTTACA
  GATACCCAGC AAAATTCTGG CACCTTACCC CCTTCAGAAG AAAATCTCCT AGTCAAAAGT
  TCTGCCTCCA GTCCAAAGAT ACAGCTGGAC TATCTTTCAG ACTGACAACA AAGATTCCCA
  GAGATGTGGG CAGAAATGAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss38491833	NES09741398	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	G	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs33848407					SNP	G	G	G	G	G	A	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38491833	NES09741398	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:149280181 () rs orientation: forward

Symbol	Name	Function Class
Gm61895	predicted gene, 61895	331 bp upstream
Tssr162303	transcription start site region 162303	319 bp upstream