rs33848408 SNP Detail

Summary

• ID
  rs33848408
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:149280147 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGAACAAAG GCCACATTAC
  TTAATCTCCC TCTGTTAGGC TGCAGGTGTC AACCTCTTAC TCTAGCAGCT TCTTACTGAA
  AGAGCAAGAA AGAGCAAGAA AGTTTTTAGG ACATTTTAGA AGTTATCAGT AGCATTTCGG
  TTCAGTTCGA GAGTGAGAGC GTCTGGAGAC CCTCAGACTT TAAAGCCACA CCAGAGTCCT
  Y
  CTCTGTGCCC CTTCTCTACC CTCTCCAGGC TGGGAGGCTC CCGGCAAGCC ACCACCATCA
  CCTTCTCTGA TGATGAGACA CAATTAGACT TACAGATACC CAGCAAAATT CTGGCACCTT
  ACCCCCTTCA GAAGAAAATC TCCTAGTCAA AAGTTCTGCC TCCAGTCCAA AGATACAGCT
  GGACTATCTT TCAGACTGAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38491834	NES09741397	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33848408					SNP	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38491834	NES09741397	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:149280147 () rs orientation: forward

Symbol	Name	Function Class
Gm61895	predicted gene, 61895	365 bp upstream
Tssr162303	transcription start site region 162303	353 bp upstream