rs33848591 SNP Detail

Summary

• ID
  rs33848591
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:132490995 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGTATAGTC CATCTTATGC
  TACCAAAAAT AAAGATTTTG TTGACTGCTT TAATCCTACC ATAGAAGATC TCAATAGTTC
  AAATTCACAA TTATTATAAT AACATATTTT TATCTTTTCA GCTCAGGTAT ATTGAGGGCT
  AAGTCTTTCA TTTGGCTCTA AGAGGAGTTT TCTATAAAGA CTGTTTTGGC AAAGCATGGG
  R
  TTAACATCTG CCTGACCACT GAACAACCAT GTACTATTTA AAATCTGACT AAAGAAAAAC
  ACCTGTATAA AAACATCACC AACATCTTTA ATATGGGTAT TTAATGAACC ATTTCAGTGC
  TTAAGAATGA AGCACTCAGA ATTTTGCATA TTTGAAAGAC AATAACAAAA GAGCACCATC
  ACCAACAAGA AAAGTGCCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38464943	NES09781955	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33848591					SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38464943	NES09781955	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:132490995 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22933	CpG island 22933	1940 bp distal
Pcdh19	protocadherin 19	within coordinates