rs33850459 SNP Detail

Summary

• ID
  rs33850459
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:140259914 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAAGGAATG AAGGGCTTTG
  CTGCAGAAAA TATTCTCCAG TTTGAAGTCT ACCCTACTTA ATTTCATATA AACTGTGAAC
  AACTAAATGT GTGACAAATT ATTTAAGTAT TATATTTGAG TACACAGAAT GGATGTTTAA
  AACCACTTAA ATATGGCATC ATAGCTTAGG CCTTCACATG GTGGAGTGAC TATCAATCCT
  K
  TAGACGCAGC TACAATATTA CAGACATCTG GGTCTACATC AAAGTTAGCT TCCTTTTGGA
  CTCAGCACAC CTCAGATCAC ATTGCCCTCT GTATATGCTA GAAAAACTGT GTATACTGCT
  GTTACAAAAA GTAACTTTGA TGTTATTGTA ATCACAACAT AATTATGATA GAAAATCTGT
  GGGAAAACTT GCACATCTAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38484193	NES09772321	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33850459					SNP	T	T	T	T	T	T	G	T	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38484193	NES09772321	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:140259914 () rs orientation: forward

Symbol	Name	Function Class
Col4a5	collagen, type IV, alpha 5	within coordinates
Rr694032	regulatory region 694032	1498 bp distal
Tssr162226	transcription start site region 162226	1450 bp downstream
Tssr162227	transcription start site region 162227	1306 bp downstream