rs33850461 SNP Detail

Summary

• ID
  rs33850461
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:140259753 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTATGGGTT AGAAGAGTGG
  GGGAGGATGC TCACACGAAA TGACAGAGCA AAAAGTTCCA CTTGCCTTTA GGAATGTAGA
  CTGGATACCA CAGCCTGTTC CTGAGCAGGA AATCTGGGTA GTCCCAACAC CCACTCTCCT
  TCTGGAGATA AGAGGTAAAT GCAAAGGAAT GAAGGGCTTT GCTGCAGAAA ATATTCTCCA
  S
  TTTGAAGTCT ACCCTACTTA ATTTCATATA AACTGTGAAC AACTAAATGT GTGACAAATT
  ATTTAAGTAT TATATTTGAG TACACAGAAT GGATGTTTAA AACCACTTAA ATATGGCATC
  ATAGCTTAGG CCTTCACATG GTGGAGTGAC TATCAATCCT TTAGACGCAG CTACAATATT
  ACAGACATCT GGGTCTACAT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss38484195	NES09772319	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs33850461					SNP	G	G	G	G	G	G	C	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38484195	NES09772319	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:140259753 () rs orientation: forward

Symbol	Name	Function Class
Col4a5	collagen, type IV, alpha 5	within coordinates
Rr694032	regulatory region 694032	1337 bp distal
Tssr162226	transcription start site region 162226	1289 bp downstream
Tssr162227	transcription start site region 162227	1145 bp downstream