rs33850462 SNP Detail

Summary

• ID
  rs33850462
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:140259751 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTCTATGGG TTAGAAGAGT
  GGGGGAGGAT GCTCACACGA AATGACAGAG CAAAAAGTTC CACTTGCCTT TAGGAATGTA
  GACTGGATAC CACAGCCTGT TCCTGAGCAG GAAATCTGGG TAGTCCCAAC ACCCACTCTC
  CTTCTGGAGA TAAGAGGTAA ATGCAAAGGA ATGAAGGGCT TTGCTGCAGA AAATATTCTC
  M
  AGTTTGAAGT CTACCCTACT TAATTTCATA TAAACTGTGA ACAACTAAAT GTGTGACAAA
  TTATTTAAGT ATTATATTTG AGTACACAGA ATGGATGTTT AAAACCACTT AAATATGGCA
  TCATAGCTTA GGCCTTCACA TGGTGGAGTG ACTATCAATC CTTTAGACGC AGCTACAATA
  TTACAGACAT CTGGGTCTAC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38484196	NES09772318	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33850462					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38484196	NES09772318	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:140259751 () rs orientation: forward

Symbol	Name	Function Class
Col4a5	collagen, type IV, alpha 5	within coordinates
Rr694032	regulatory region 694032	1335 bp distal
Tssr162226	transcription start site region 162226	1287 bp downstream
Tssr162227	transcription start site region 162227	1143 bp downstream