rs33850715 SNP Detail

Summary

• ID
  rs33850715
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:140259259 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCTCTGGAG GATATTTAAA
  ACTTTTCTTC CTCTCTATCC CCCACCCAGG GTAGCTGTCT ACCAGCTAGC TTCTTTCACT
  ACTTGGACCC AGCCCAAGCA CGATTTAACC TTGGTTTATA GTTTAAAATT TGGTTCCTCT
  AAAATTGAAC TGTGGTCAGT GTGGTAATAG CCTTGATGGA GTTCTTCTCT TGGCATATGC
  Y
  CTTTTCTTAA GCCACATGAA CCCACCCCCC ACCCCAGGTT TGTAAAGTTC TGCCCTGTTT
  TCTGACCTGT TGACATCATT CTTTTACAAA AGATAAAATA ACCTATCAAC CAGGACGAAG
  TAAAGAAGCA TACATAGTCT TATGCTTCAG GAGTTTTGCA CATTAAAAAA AAAAAGTTAT
  GGGTTTCTGT TGGCTTGCAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38484199	NES09772315	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33850715					SNP	T	T	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38484199	NES09772315	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:140259259 () rs orientation: forward

Symbol	Name	Function Class
Col4a5	collagen, type IV, alpha 5	within coordinates
Rr694032	regulatory region 694032	843 bp distal
Tssr162226	transcription start site region 162226	795 bp downstream
Tssr162227	transcription start site region 162227	651 bp downstream