rs33850717 SNP Detail

Summary

• ID
  rs33850717
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:140258044 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGTTACAAT AACATTTAAC
  CTTTTAACAT TATTAACCTA CTTAATGCAT CCTATATGGC ATATGTTGTT ACATACATTA
  GGTATTCACA AATACATATG TTCATTGTCT TACTTTATAT ACGTATATCT AATATTTTCT
  CATTTTCTGT TTGTATATAG AAACTGTCCT ACCAACACTT GAAAGGCAAA GGCCAGCAGC
  M
  CATGGAGCAG AGGCGAAAAC TTTGTTTCTA ATGATTAACA ATAAAAAGCA CCACACTCTG
  AAATCCATCC GCTGGAAAAA ATAGTCCCAG CTCAGGTCTG TTTGTCAATG GCTTTGATGC
  AGACATCTGA GGGAAAGCTG GACTGGCAGG CAAGAGTACT GTTAAGAGAA GCTGCCAATG
  AACAAACGAG AAATCTTTTT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss38484201	NES09772313	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	A	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs33850717					SNP	C	C	C	C	C	A	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38484201	NES09772313	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:140258044 () rs orientation: forward

Symbol	Name	Function Class
Col4a5	collagen, type IV, alpha 5	337 bp upstream
Col4a6	collagen, type IV, alpha 6	972 bp upstream
Rr694032	regulatory region 694032	within coordinates
Tssr162226	transcription start site region 162226	337 bp upstream
Tssr162227	transcription start site region 162227	552 bp upstream
Tssr164268	transcription start site region 164268	1190 bp upstream
Tssr164269	transcription start site region 164269	1154 bp upstream
Tssr164270	transcription start site region 164270	957 bp upstream