rs33850718 SNP Detail

Summary

• ID
  rs33850718
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:140257721 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCAAATTCC TGAAAGACAC
  TCCAAGGAGT CCACATCGTG TATATTTTTG GTCTTTTGGT TCTTAAAAGT GTCTACAAGT
  TATCAAAGCG ATATGCATGC CTACTTCATC TAGGAGACAC AAATTCAACT ACTATTGACT
  CCATATAGAC ATTTTAAATG AGATGCTTGT TTTAGTTGTA AGGAATTATG CTAATGTTAT
  W
  TAATTGCTTG CCACAGGTCC TTCTGAAATA GAATGATGGC AGCCACTACC TTTTACCTTA
  GCTTGATATA AGTGACAAAT ATTATTTATG GTACTCAATA CATGTAAATA GAAACAGTAA
  GTAAGTTACA ATAACATTTA ACCTTTTAAC ATTATTAACC TACTTAATGC ATCCTATATG
  GCATATGTTG TTACATACAT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38484202	NES09772312	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	A	T	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33850718					SNP	A	A	A	A	A	A	T	A	A	A	T	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38484202	NES09772312	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:140257721 () rs orientation: forward

Symbol	Name	Function Class
Col4a5	collagen, type IV, alpha 5	660 bp upstream
Col4a6	collagen, type IV, alpha 6	649 bp upstream
Rr694032	regulatory region 694032	308 bp proximal
Tssr162226	transcription start site region 162226	660 bp upstream
Tssr162227	transcription start site region 162227	875 bp upstream
Tssr164268	transcription start site region 164268	867 bp upstream
Tssr164269	transcription start site region 164269	831 bp upstream
Tssr164270	transcription start site region 164270	634 bp upstream