rs33850966 SNP Detail

Summary

• ID
  rs33850966
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:67598260 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        AGTTC TGATTTATAG GTTTTGTGTA
  M
  ATATTGTCTG TCCAGAATGA CTAAC                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39121142	mCV23956274	ABI	CRAMUS_MOUSE	f	SNP	A	A	A	C	A
ss149266900	ENSMUSSNP1293829	ENSEMBL	ENSEMBL_Sanger	r	SNP		T	T		T
ss324392130	CHEV_13_67551077	CHEVERUD	SCREENING_POP	r	SNP						T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33850966					SNP	A	A	A	C	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:67598260 () rs orientation: reverse

Symbol	Name	Function Class
Gm38307	predicted gene, 38307	1517 bp upstream
Rr388629	regulatory region 388629	233 bp upstream
Rr482020	regulatory region 482020	790 bp proximal
Rr482021	regulatory region 482021	1432 bp proximal
Tssr120253	transcription start site region 120253	1106 bp upstream
Tssr123102	transcription start site region 123102	1450 bp downstream
Zfp874a	zinc finger protein 874a	within coordinates