rs33851663 SNP Detail

Summary

• ID
  rs33851663
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:180829211 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  GAACCTAGCA TTGCAGAAGG TAGGGTGGAT TCTTGCTCCG CTCGGGGTGG AGTCTAATAG
  GGAAGGGCGG GACCACTTCG TGCTACTGCT GGTCTATCAG GGGAGCTCAA AAGTCTCATG
  GGTGGGCCCG CTGTGAAGCG GGAGGGGCTT TGACGCGCGC CCCGCCTCCC AGTGGTGCGT
  CTTTTGCGGT GCAGGAAAGC TACTAAGTAC GCGCGTGCGC ATAGCGCGCG TGGGTCCTAA
  AGTGGTGTTT CGTGGGTTAT CTTTGCAAAT GGGCTCCGCG GCCTAGCGCC CTGGTGGCCT
  W
  AAAACGAAGC CTGCAAGGAA GGGGTTCTCC GCCGAGGTGA GGGCAGTGAC GAAGGCAGCC
  GGCGGTGGGG TGGGGGAGGC GCGTCTTCTT GGGGCCAGGA GCAGACAAAG CCCCTTTGTC
  TCACCACGCA GCCGGACCGG GCTGGTTGGA GCCGCTTGGA AACCTGGCAC TGTCAGGACC
  CGGGAGACTC GGGGAACCCT CCGGTGTGCG GTGACCAGGG CCCACATTCT GCTCTCGTCT
  CCGCAGCGCC TCGGTCCTGA AGCATGGCAG CCATCCCTTC CAGCGGCTCG CTCGTGGCTA
                                                                   
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45365897	mCV22912903	ABI	CRAMUS_MOUSE	f	SNP	A	A	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33851663					SNP	A	A	T	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:180829211 () rs orientation: forward

Symbol	Name	Function Class
C330003G01Rik	RIKEN cDNA C330003G01 gene	within coordinates
Cpgi12916	CpG island 12916	within coordinates
Gm75115	predicted gene, 75115	within coordinates
Gm75119	predicted gene, 75119	1716 bp upstream
Ppdpf	pancreatic progenitor cell differentiation and proliferation factor	within coordinates
Rr374383	regulatory region 374383	within coordinates
Rr572939	regulatory region 572939	72 bp distal
Rr572940	regulatory region 572940	121 bp distal
Rr572941	regulatory region 572941	within coordinates
Rr572942	regulatory region 572942	285 bp proximal
Rr572943	regulatory region 572943	1226 bp proximal
Rr572944	regulatory region 572944	1727 bp proximal
Tssr22287	transcription start site region 22287	71 bp downstream
Tssr22288	transcription start site region 22288	within coordinates
Tssr22289	transcription start site region 22289	91 bp upstream
Tssr22290	transcription start site region 22290	179 bp upstream
Tssr22291	transcription start site region 22291	218 bp upstream
Tssr22292	transcription start site region 22292	361 bp upstream
Tssr22293	transcription start site region 22293	459 bp upstream