rs33851925 SNP Detail

Summary

• ID
  rs33851925
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:164129706 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATCTT TTGCACAAGG GTTTAAACTT
  R
  GACATTGGTT ATTGACCTGT TAAAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	LG/J	SM/J
ss45365967	mCV23736983	ABI	CRAMUS_MOUSE	f	SNP	G	A
ss148221502	ENSMUSSNP1815085	ENSEMBL	ENSEMBL_Sanger	f	SNP		A
ss320605227	CHEV_2_164113522	CHEVERUD	SCREENING_POP	f	SNP			A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	LG/J	SM/J
rs33851925					SNP	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164129706 () rs orientation: forward

Symbol	Name	Function Class
Svs3a	seminal vesicle secretory protein 3A	1482 bp upstream
Tssr740	transcription start site region 740	1802 bp upstream
Tssr741	transcription start site region 741	1967 bp upstream
Tssr21553	transcription start site region 21553	1411 bp upstream
Tssr21554	transcription start site region 21554	1430 bp upstream
Tssr21555	transcription start site region 21555	1475 bp upstream
Tssr21556	transcription start site region 21556	1823 bp upstream