rs33851985 SNP Detail

Summary

• ID
  rs33851985
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:111831455 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAACA GTTCCTCATC CCATTCTTCC
  W
  CCCCCTTCTC CAAGTGAATG TCTCC                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45585372	mCV22669756	ABI	CRAMUS_MOUSE	f	SNP	T	T	A	T
ss147213656	ENSMUSSNP1692091	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		T
ss321263752	CHEV_4_111646863	CHEVERUD	SCREENING_POP	f	SNP					T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33851985					SNP	T	T	A	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:111831455 () rs orientation: forward

Symbol	Name	Function Class
Skint7	selection and upkeep of intraepithelial T cells 7	Intron
Tssr38394	transcription start site region 38394	1404 bp downstream
Tssr38395	transcription start site region 38395	1312 bp downstream
Tssr38396	transcription start site region 38396	1186 bp downstream