rs33854109 SNP Detail

Summary

• ID
  rs33854109
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:35533705 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAGGTGAATG TGATTGGCTG ATCTACATGA TGCTGTGTGT
  GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GAGGTGGATG TGATTGGCTG
  R
  TCTACATGAT GCTGTGTGTG TGAGGTGGAT GTGATTGGCT GATCTACATG ATGCTGTGTG
  TGTGAGGTGG ATGTGATGGG CTGATCTACA TGATGCTGTG                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss49582219	NES12861786	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs33854109					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49582219	NES12861786	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:35533705 () rs orientation: forward

Symbol	Name	Function Class
Gm65945	predicted gene, 65945	within coordinates
Rr75484	regulatory region 75484	126 bp distal
Rr75485	regulatory region 75485	251 bp proximal