rs33854296 SNP Detail

Summary

• ID
  rs33854296
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:156819546 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTAAGAGAC CATTCTTAAG
  GAATGGGCTG AGTATATATA TTTTTTTAGA AGAAAAAAAA AGAGGGAGGG AGGGAGGGGT
  AAAGGGAGGG AAGAAAGGAG GGAGGGGATG AAGGAGGGAG GGAGGGAAAG AAGCAAAGGG
  GGAAGGGATG GAAGGAAGGT GTATGGAGAG GCGGGAAAGG GGGTCAGTAG AAGACCAGGA
  R
  CAGTCAGGTG GGTGTTGGTT TAGAAGAGTG GGTGAGGGGA AAGAGGGGCG GGGGCAGGGA
  GGTGAGAGAT GGGGAAAGGA GGGAGTGAAC AGAGAAGAAG GAAGAAAGGA AGAGAGAAAA
  GGGAAGAGGA GCTGACGTGA TGGGGCTGTG GGGTGGCTTG GTGGGTAATG TGCTTGCCTC
  AGAAGCATGA AGATCTGCGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49719812	NES13064749	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33854296					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49719812	NES13064749	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:156819546 () rs orientation: forward

Symbol	Name	Function Class
Gm28694	predicted gene 28694	within coordinates
Gm70243	predicted gene, 70243	1795 bp upstream
Rr372293	regulatory region 372293	1740 bp upstream
Rr396431	regulatory region 396431	1393 bp downstream
Rr421298	regulatory region 421298	451 bp distal
Rr421299	regulatory region 421299	295 bp distal
Rr421300	regulatory region 421300	568 bp proximal
Rr421301	regulatory region 421301	1966 bp proximal