rs33854505 SNP Detail

Summary

• ID
  rs33854505
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:5901883 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  GAGATGGCAG TGTACGTGTG TGAGAGAGAT GGCAGTGTGT GTGCCTGAGA GAGATGGCAG
  AGTGTGTGTG TGAGAGAGAT GGCAGTATGT GTGTGAGAGA GATGGTTGTG TGTGTGTGAG
  AGAGATGGTT GTGTGTATAT GAGAGAGATG GCAGTGTGTG TGTGTGTGTG TGTGTGTGTG
  TGTGAGAGAG AGAGAGAGGG CAGTGTATGT GTGTGAGAGA GATGGCAGAG TGTGTGTGTG
  TGTGAGAGAG AGAGAGAGAT GGCAGTATAT GTGTGTGAGA GAGATGGAAG TGTGTATGTG
  W
  GAGAGAGAGA GTTGGCAGTG TGTGTGTGCC TGAGAGAGAT GGCTGTGTGT GTGTGAGAGA
  GATGACTGTG TGTGTGAGAG AGATGGCTGT GTGTGTGAGA GAGAGATGAC TGTGTGTGTG
  AGAGAGATGG CTGTGTGAGA GAGAGATGGC TGTGTGTGTG TGAGAGAGAT GGCTGTGTGT
  GAGAGAGATG GCTGTGTGCG TGTGCCTGAG AGAGAGTTGG CAGTGTGTGT GTGTGAGAGA
  GAGATGGCTG TGTATGCATG GAGTGATCTT TGAGGCTGCT GCTATCCTCT GTAGTAAGCC
                                                                   
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	DBA/2J
ss39574853	mCV23633539	ABI	CRAMUS_MOUSE	f	SNP	A	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	DBA/2J
rs33854505					SNP	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:5901883 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8562	CpG island 8562	1841 bp distal
E130303B20Rik	RIKEN cDNA E130303B20 gene	within coordinates
Rr521227	regulatory region 521227	1604 bp distal
Snx9	sorting nexin 9	within coordinates
Tssr142443	transcription start site region 142443	808 bp downstream