rs33857601 SNP Detail

Summary

• ID
  rs33857601
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:90920031 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACTTT ATTTGCAGTA GTGGGGGCAC
  Y
  GCCATCCCGC TCAACATTTG TAGCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss38527985	mCV24611839	ABI	CRAMUS_MOUSE	f	SNP	T	T	C
ss147290299	ENSMUSSNP4632210	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
ss323387289	CHEV_10_90546914	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs33857601					SNP	T	T	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:90920031 () rs orientation: forward

Symbol	Name	Function Class
Apaf1	apoptotic peptidase activating factor 1	1399 bp upstream
Cpgi2099	CpG island 2099	633 bp distal
Ikbip	IKBKB interacting protein	within coordinates
Rr402144	regulatory region 402144	1015 bp downstream
Rr436976	regulatory region 436976	1751 bp distal
Rr436977	regulatory region 436977	1102 bp distal
Tssr95223	transcription start site region 95223	1141 bp downstream
Tssr95224	transcription start site region 95224	1094 bp downstream
Tssr95225	transcription start site region 95225	1066 bp downstream
Tssr98900	transcription start site region 98900	1592 bp upstream
Tssr98901	transcription start site region 98901	1508 bp upstream
Tssr98902	transcription start site region 98902	1469 bp upstream
Tssr98903	transcription start site region 98903	1396 bp upstream
Tssr98904	transcription start site region 98904	1362 bp upstream