rs33857716 SNP Detail

Summary

• ID
  rs33857716
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:127345800 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTGTT CCCTTCGCCC TTGGTTGTCA
  M
  GCTCAAAGCC TGGCTGTGTG AGGGC                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38625878	mCV22968929	ABI	CRAMUS_MOUSE	f	SNP	A	A	A				C
ss61334361	NES16949418	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	C	C	C	A	C	A	C	C	C
ss147732711	ENSMUSSNP6312780	ENSEMBL	ENSEMBL_Sanger	f	SNP			A				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33857716					SNP	A	A	A	A	C	C	C	A	C	A	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61334361	NES16949418	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:127345800 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2359	CpG island 2359	1605 bp distal
Cpgi2360	CpG island 2360	335 bp distal
Cpgi2361	CpG island 2361	1610 bp proximal
Rr402328	regulatory region 402328	1266 bp downstream
Rr402329	regulatory region 402329	600 bp downstream
Rr440928	regulatory region 440928	782 bp distal
Rr440929	regulatory region 440929	170 bp distal
Rr440930	regulatory region 440930	1995 bp proximal
Stac3	SH3 and cysteine rich domain 3	1108 bp downstream