rs33857871 SNP Detail

Summary

• ID
  rs33857871
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:28777966 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTTAC AGTTTGCCTG ACTTTCCCAT
  Y
  CATGGCTGAG GTGTCATGTT GTCAC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	DBA/2J	LG/J	PWD/PhJ	SM/J
ss39023257	mCV22628064	ABI	CRAMUS_MOUSE	f	SNP	C	C	C			T	C
ss52346800	NES15375491	PERLEGEN	MM_PANEL2	f	SNP				C	C				T
ss137505123	ENSMUSSNP181820	ENSEMBL	ENSEMBL_Sanger	f	SNP			C				C
ss323972619	CHEV_12_29412832	CHEVERUD	SCREENING_POP	f	SNP								C		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	DBA/2J	LG/J	PWD/PhJ	SM/J
rs33857871					SNP	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52346800	NES15375491	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:28777966 () rs orientation: forward

Symbol	Name	Function Class
Rr269361	regulatory region 269361	1304 bp distal
Rr269362	regulatory region 269362	349 bp distal
Trappc12	trafficking protein particle complex 12	within coordinates