rs33858038 SNP Detail

Summary

• ID
  rs33858038
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:112979054 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCTGG AGGGGGATCT GAGTAGAGAG
  R
  TGCTAGGAAG GAGAAGGGGA ACTTT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39020344	mCV24485853	ABI	CRAMUS_MOUSE	f	SNP	A	G	A	A
ss138730665	ENSMUSSNP5526173	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G		A
ss324172775	CHEV_12_114253645	CHEVERUD	SCREENING_POP	f	SNP					G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33858038					SNP	A	G	A	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:112979054 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5198	CpG island 5198	215 bp distal
Gm61130	predicted gene, 61130	1126 bp upstream
Pacs2	phosphofurin acidic cluster sorting protein 2	within coordinates
Tssr115451	transcription start site region 115451	964 bp downstream
Tssr115452	transcription start site region 115452	921 bp downstream
Tssr115453	transcription start site region 115453	895 bp downstream
Tssr115454	transcription start site region 115454	877 bp downstream
Tssr115455	transcription start site region 115455	866 bp downstream
Tssr117933	transcription start site region 117933	1171 bp upstream