rs33859231 SNP Detail

Summary

• ID
  rs33859231
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr15:11138535 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAATTGCCA TATTGTGTAC
  ATCAAAGGTA CTGAGGTATT TGTCGAATAT AAGTGCCTAT GAGTGTATGT TATACTAAGT
  GGATGATATT TGCTTTTGAA AAATTTCAAA ATAATATAAT GGAGAAAGAG GAGAAAAAAA
  TCACCCTTGT GTACTCTTTT GACCACACCC CCTTAGAGTT CTGTCTGTGA CACCTGGCAT
  R
  CTGGCAGAGA GGTAACTGCT GTGCAGTAGG CTAGTTCTGT GGTACTTGTT CATAATCCAA
  AGGGTCCAGC CATAACTGGT CACAGGCTGT CCCCACTTGG ATGCTGACAG AGCAGTAAGA
  ATAGCATGAA GGTTAAACCC TAATGAATAC TAATCAATGT GAGAATGTAG GGGAAAAAGT
  CATTAAGCTT CAGGGAGTGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ
ss39381287	mCV23065181	ABI	CRAMUS_MOUSE	f	SNP		G	A					A		A
ss62628151	NES17310229	PERLEGEN	MM_PANEL2	f	SNP	G		A	A	A	G	A		G	A	A	G	G	A
ss147069673	ENSMUSSNP4016562	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A							A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ
rs33859231					SNP	G	G	A	A	A	G	A	A	G	A	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62628151	NES17310229	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:11138535 () rs orientation: forward

Symbol	Name	Function Class
Adamts12	ADAM metallopeptidase with thrombospondin type 1 motif 12	Intron
Rr390347	regulatory region 390347	65 bp upstream