rs33859294 SNP Detail

Summary

• ID
  rs33859294
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:67101429 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGGAAAGTT CTTGCTGTTT
  GGTTCAGCTG AGAAGAACTT TGTAAAGTTG TCTTCTTGGT GGTGGGGGGT GGGGGGCAAG
  AGGAAAGACA GCCTGATATA GAGCAATGGG GTTCAAGATA AAGGAAAAGT TGTAAGATGA
  GGTACAATTG CTTCAGGTTC AATTAAAAAC CAGGCTTTCT AGAGTAAGGG TTCAGCTCAG
  Y
  GGGAAAGCAG GTGCCTCATA TATGCGGAGC CTTGGGTTTC GTGTCCAGCA CCCTAATTTT
  TTAGTCAAAG AGAAAGTAAA TTAATGCAAA GCATCTCCTA TATGAATTAA TGAAATATGA
  TTGACATGAA TATGAATTTT TCCAGATTTT TTTTCAGTGG TTTCTGGTGA GTAAAAAAAA
  GAAAAGAACA ACACACGAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39613960	mCV25058560	ABI	CRAMUS_MOUSE	f	SNP	T	C	T	T
ss147343226	ENSMUSSNP3816537	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33859294					SNP	T	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:67101429 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10165	CpG island 10165	593 bp proximal
Gm50164	predicted gene, 50164	within coordinates
Rr355164	regulatory region 355164	1829 bp distal
Rr356406	regulatory region 356406	665 bp distal
Rr393837	regulatory region 393837	1166 bp upstream