rs33859968 SNP Detail

Summary

• ID
  rs33859968
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:165591752 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CGGGCGAGCC CTACATGTAC CTGAGTCCAC TGCAGCAAGC
  CGTGAGCGAC CTGCAGGTGA GCGGGAGCGC GGCGCGGTTT CCCAGACCCG GCAGAGCAGG
  R
  AACCAGCGTC TCCAGTTTAG CTCGCTGGGG AGAGCGTGGG TCTTAGAGAT AAGACTTTTG
  AACCCAGCTC ACATGACTGT CTCTTCTGGC CTGCGCTGG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	C57BL/6J	DBA/2J
ss45125891	mCV24495036	ABI	CRAMUS_MOUSE	f	SNP	A	A	A	G
ss146006558	ENSMUSSNP4904715	ENSEMBL	ENSEMBL_Sanger	f	SNP		A		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	C57BL/6J	DBA/2J
rs33859968					SNP	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:165591752 () rs orientation: forward

Symbol	Name	Function Class
Cpgi955	CpG island 955	within coordinates
Creg1	cellular repressor of E1A-stimulated genes 1	within coordinates
Rr28876	regulatory region 28876	within coordinates
Rr396502	regulatory region 396502	344 bp downstream
Tssr9817	transcription start site region 9817	399 bp downstream
Tssr9818	transcription start site region 9818	1663 bp upstream
Tssr9819	transcription start site region 9819	1925 bp upstream