rs33860004 SNP Detail

Summary

• ID
  rs33860004
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:170472381 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTTTA GACGTTAGAC GGTTCTCTGA
  R
  CATCTACTCT TCCGGACTCC AGTGA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45125915	mCV23618297	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	A	A
ss320111993	CHEV_1_172574943	CHEVERUD	SCREENING_POP	f	SNP						A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33860004					SNP	G	G	G	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:170472381 () rs orientation: forward

Symbol	Name	Function Class
Cpgi995	CpG island 995	within coordinates
Olfml2b	olfactomedin-like 2B	within coordinates
Rr28935	regulatory region 28935	within coordinates
Tssr280	transcription start site region 280	461 bp upstream
Tssr9927	transcription start site region 9927	1961 bp downstream
Tssr9928	transcription start site region 9928	354 bp downstream
Tssr9929	transcription start site region 9929	298 bp downstream
Tssr9930	transcription start site region 9930	242 bp downstream
Tssr9931	transcription start site region 9931	226 bp downstream
Tssr9932	transcription start site region 9932	210 bp downstream
Tssr9933	transcription start site region 9933	within coordinates
Tssr14922	transcription start site region 14922	472 bp upstream
Tssr14923	transcription start site region 14923	420 bp upstream