rs33860449 SNP Detail

Summary

• ID
  rs33860449
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:64997130 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACTAA GGTATAGGTA TATTAAGCTC
  Y
  GCCCAGTATG GAATCAGAGC CTCCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45139712	mCV23030156	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	C
ss149168863	ENSMUSSNP1472592	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		C
ss319746081	CHEV_1_65004545	CHEVERUD	SCREENING_POP	f	SNP					T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33860449					SNP	T	T	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:64997130 () rs orientation: forward

Symbol	Name	Function Class
Cpgi329	CpG island 329	1084 bp distal
Gm51627	predicted gene, 51627	within coordinates
Plekhm3	pleckstrin homology domain containing, family M, member 3	1147 bp upstream
Rr412356	regulatory region 412356	1459 bp distal
Rr412357	regulatory region 412357	1158 bp distal
Rr412358	regulatory region 412358	1205 bp distal
Rr412359	regulatory region 412359	657 bp distal
Tssr11945	transcription start site region 11945	1246 bp upstream
Tssr11946	transcription start site region 11946	1189 bp upstream
Tssr11947	transcription start site region 11947	1153 bp upstream
Tssr11948	transcription start site region 11948	1136 bp upstream