rs33860505 SNP Detail

Summary

• ID
  rs33860505
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135280999 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACTGA GCCATCTCTC TATCCTAAAA
  Y
  CTTAAAAGGA AATCTCTCTT TTTTT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	DBA/2J	LG/J	SM/J
ss45135467	mCV23631374	ABI	CRAMUS_MOUSE	f	SNP	C	T
ss145531712	ENSMUSSNP1445275	ENSEMBL	ENSEMBL_Sanger	f	SNP		T
ss319989350	CHEV_1_137249838	CHEVERUD	SCREENING_POP	f	SNP			T	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	DBA/2J	LG/J	SM/J
rs33860505					SNP	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135280999 () rs orientation: forward

Symbol	Name	Function Class
Gm56137	predicted gene, 56137	456 bp downstream
Lmod1	leiomodin 1 (smooth muscle)	within coordinates
Rr35730	regulatory region 35730	989 bp distal