rs33860830 SNP Detail

Summary

• ID
  rs33860830
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:191711220 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGTGA GCATCGTGAT CCCCTCTAAC
  W
  GTCTGAAACC AGAGTCCTCT TGCCT                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45175532	mCV25303772	ABI	CRAMUS_MOUSE	f	SNP		A					T		A
ss60361397	NES15865111	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A		T	A	A	A		T	A	T	A		T
ss146512959	ENSMUSSNP3642496	ENSEMBL	ENSEMBL_Sanger	f	SNP		A							A
ss320196700	CHEV_1_193803140	CHEVERUD	SCREENING_POP	f	SNP												A					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33860830					SNP	A	A	A	A	A	A	T	T	A	A	A	A	T	A	T	A	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60361397	NES15865111	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:191711220 () rs orientation: forward

Symbol	Name	Function Class
Gm70534	predicted gene, 70534	1075 bp upstream
Rd3	retinal degeneration 3	Intron
Rr426276	regulatory region 426276	1876 bp distal
Rr426277	regulatory region 426277	1694 bp distal
Rr426278	regulatory region 426278	28 bp proximal
Tssr10797	transcription start site region 10797	1870 bp downstream
Tssr10798	transcription start site region 10798	1859 bp downstream
Tssr10799	transcription start site region 10799	1814 bp downstream
Tssr10800	transcription start site region 10800	1000 bp downstream
Tssr10801	transcription start site region 10801	968 bp downstream